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The UCSC Cancer Genomics Browser (https://genome-cancer.ucsc.edu) comprises a suite of web-based tools to integrate, visualize and analyze cancer genomics and clinical data. The browser displays whole-genome views of genome-wide experimental measurements for multiple samples alongside their associated clinical information.
Find out if the mouse TP53 gene has a full length clone available. Step Action 3 1 Go to the UCSC Genome Browser homepage, genome.ucsc.edu 2 Enter the Gateway, by clicking the Genome Browser link from the homepage. 3 Select Vertebrate as the clade, Mouse as the genome. Choose the most current assembly. 4 Enter the text tp53 in the text
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FUNCTION: E3 ubiquitin-protein ligase that mediates ubiquitination of p53/TP53, leading to its degradation by the proteasome. Inhibits p53/TP53- and p73/TP73-mediated cell cycle arrest and apoptosis by binding its transcriptional activation domain. Also acts as an ubiquitin ligase E3 toward itself and ARRB1. Permits the nuclear export of p53/TP53.
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genome browsers for this exercise. Both allow you to export images of the browser window and offer links to download sequence data. Ensembl genome browser To access the Ensembl genome browser, click on the Location tab (which should have a title: Chromosome 17: 7,661,779-7,687,550. This indicates that the TP53 gene is located on
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Grey m lok hand stop This track shows various repeat regions that have been annotated along the genome. UCSC genome browser : Conservation: PhastCons conservation scores derived from multiple alignments of 45 vertebrate genomes to the human genome. UCSC genome browser , This track shows various repeat regions that have been annotated along the genome. UCSC genome browser : Conservation: PhastCons conservation scores derived from multiple alignments of 45 vertebrate genomes to the human genome. UCSC genome browser Channel 5 news stories
  • Find out if the mouse TP53 gene has a full length clone available. Step Action 3 1 Go to the UCSC Genome Browser homepage, genome.ucsc.edu 2 Enter the Gateway, by clicking the Genome Browser link from the homepage. 3 Select Vertebrate as the clade, Mouse as the genome. Choose the most current assembly. 4 Enter the text tp53 in the text

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    UCSC Genome Browser on Human Dec. 2013 (GRCh38/hg38) Assembly move zoom in zoom out Jim Kent and David Haussler at the University of California, Santa Cruz played a significant role in the first release of a draft human genome sequence in 2000 [9, 10], which became available from UCSC by bulk download at that time. Several billion bases of DNA in a text file are difficult to interpret, however, and specialized visualization ...

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  • May 10, 2016 · Demonstration of species/genome assembly selection page (Gateway) on the UCSC Genome Browser. There is no audio on this video.

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    Mar 07, 2018 · A tutorial that shows how to use the UCSC genome browser to visualise different tracks, how genes are represented, how to visualise splice variants and SNPs. (Use the cog wheel on your window to ...

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  • Sequence and Annotation Downloads. This page contains links to sequence and annotation data downloads for the genome assemblies featured in the UCSC Genome Browser. Table downloads are also available via the Genome Browser FTP server. For quick access to the most recent assembly of each genome, see the current genomes directory. This directory ...

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    Sequence and Annotation Downloads. This page contains links to sequence and annotation data downloads for the genome assemblies featured in the UCSC Genome Browser. Table downloads are also available via the Genome Browser FTP server. For quick access to the most recent assembly of each genome, see the current genomes directory. This directory ...

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  • Jan 23, 2015 · This tutorial demonstrates how to find all the single nucleotide polymorphisms in a gene using the UCSC Genome Browser. 0:43 - Set up Genome Browser display to see your gene. 1:35 - Turn on the ...

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    Mar 15, 2016 · UCSC genome browserは、米国カルフォルニア大学サンタクルズ校が提供するオンラインゲノムブラウザです。 ... TP53を入力し、GO ...

    Enable network level authentication windows 7 clientThe Ensembl Genome Browser: an overview What is a stable identifier in Ensembl? Stable identifiers are IDs for features (gene, transcript, protein, exon, etc.) that should not change even when underlying data and meta-data for those features change. Find out if the mouse TP53 gene has a full length clone available. Step Action 3 1 Go to the UCSC Genome Browser homepage, genome.ucsc.edu 2 Enter the Gateway, by clicking the Genome Browser link from the homepage. 3 Select Vertebrate as the clade, Mouse as the genome. Choose the most current assembly. 4 Enter the text tp53 in the text To jump directly to a gene's position on the Genome Browser, set the position parameter in the URL to a gene symbol (e.g., TP53, MTOR, KRAS) and add the parameter singleSearch=knownCanonical. For example, the following link will open the Genome Browser for the hg19 human assembly at the position of TP53 on the knownCanonical dataset
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  • Sequence and Annotation Downloads. This page contains links to sequence and annotation data downloads for the genome assemblies featured in the UCSC Genome Browser. Table downloads are also available via the Genome Browser FTP server. For quick access to the most recent assembly of each genome, see the current genomes directory. This directory ...

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    Jim Kent and David Haussler at the University of California, Santa Cruz played a significant role in the first release of a draft human genome sequence in 2000 [9, 10], which became available from UCSC by bulk download at that time. Several billion bases of DNA in a text file are difficult to interpret, however, and specialized visualization ...

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  • Jan 23, 2015 · This tutorial demonstrates how to find all the single nucleotide polymorphisms in a gene using the UCSC Genome Browser. 0:43 - Set up Genome Browser display to see your gene. 1:35 - Turn on the ...

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    The UCSC Genome Browser is a visualization tool for the human genome providing a view of its genes and chromosomal features. Results from GWAS studies, conservation between other species, and results from many genomic and epigenomic studies are also provided. The Browser also has similar genomic information for a large number of animal species. genome browsers for this exercise. Both allow you to export images of the browser window and offer links to download sequence data. Ensembl genome browser To access the Ensembl genome browser, click on the Location tab (which should have a title: Chromosome 17: 7,661,779-7,687,550. This indicates that the TP53 gene is located on The genome browser shows COSMIC annotations for TP53 in a genomic context. Show more Note: in some web browsers the genome browser may display a blank content panel when switching between browser tabs or when returning to the page using the browser's Back button. Mouse strain assembly hub - May 3, 2017. This assembly hub contains 16 different strains of mice as the primary sequence, along with strain-specific gene annotations. Viewing this assembly hub on mm10, there will be a multiple alignment between the reference and 16 different strains of mice plus rat.

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  • On June 22, 2000, UCSC and the other members of the International Human Genome Project consortium completed the first working draft of the human genome assembly, forever ensuring free public access to the genome and the information it contains.

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    TP53 - tumor protein p53 . ... PhastCons conservation scores derived from multiple alignments of 45 vertebrate genomes to the human genome. UCSC genome browser : TP53 ... The Genome Browser Gateway start page choices, April 2007 Make your Gateway choices: 1. Select Clade 2. Select genome = species: search 1 species at a time 3. Assembly: the official backbone DNA sequence 4. Position: location in the genome to examine 5. Image width: how many pixels in display window; 5000 max 6. Configure: make fonts bigger ... How do I identify codon numbers with the UCSC Genome Browser? This tutorial will demonstrate how to locate amino acid numbers for coding genes using the UCSC Genome Browser . First we will navigate to genome.ucsc.edu and arrive on the main page at which place we can read information about the Browser and recent news.

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  • You might want to navigate to your nearest mirror - genome.ucsc.edu. User settings (sessions and custom tracks) will differ between sites. Read more. Take me to genome.ucsc.edu; Let me stay here genome-euro.ucsc.edu

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  • Aug 18, 2012 · The UCSC Genome Browser () is a graphical viewer for genomic data now in its 13th year. Since the early days of the Human Genome Project, it has presented an integrated view of genomic data of many kinds. Now home to assemblies for 58 organisms, the Browser ...

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    Mouse strain assembly hub - May 3, 2017. This assembly hub contains 16 different strains of mice as the primary sequence, along with strain-specific gene annotations. Viewing this assembly hub on mm10, there will be a multiple alignment between the reference and 16 different strains of mice plus rat.

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  • The University of California Santa Cruz (UCSC) Genome Browser is a popular Web-based tool for quickly displaying a requested portion of a genome at any scale, accompanied by a series of aligned annotation “tracks.” The annotations generated ...

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    May 10, 2016 · Demonstration of species/genome assembly selection page (Gateway) on the UCSC Genome Browser. There is no audio on this video.
    The University of California Santa Cruz (UCSC) Genome Browser (genome.ucsc.edu) is a popular Web-based tool for quickly displaying a requested portion of a genome at any scale, accompanied by a series of aligned annotation “tracks”.
    VGP - Vertebrate Genomes Project assembly hub. This assembly hub contains assemblies released by the Vertebrate Genomes Project.. How to view the hub. You can load this hub from our Public Hubs page or by clicking these links to any of our official websites: Jan 23, 2015 · This tutorial demonstrates how to find all the single nucleotide polymorphisms in a gene using the UCSC Genome Browser. 0:43 - Set up Genome Browser display to see your gene. 1:35 - Turn on the ...
    Sequence and Annotation Downloads. This page contains links to sequence and annotation data downloads for the genome assemblies featured in the UCSC Genome Browser. Table downloads are also available via the Genome Browser FTP server. For quick access to the most recent assembly of each genome, see the current genomes directory. This directory ... How do I identify codon numbers with the UCSC Genome Browser? This tutorial will demonstrate how to locate amino acid numbers for coding genes using the UCSC Genome Browser . First we will navigate to genome.ucsc.edu and arrive on the main page at which place we can read information about the Browser and recent news.

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  • This track shows various repeat regions that have been annotated along the genome. UCSC genome browser : Conservation: PhastCons conservation scores derived from multiple alignments of 45 vertebrate genomes to the human genome. UCSC genome browser

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    Jim Kent and David Haussler at the University of California, Santa Cruz played a significant role in the first release of a draft human genome sequence in 2000 [9, 10], which became available from UCSC by bulk download at that time. Several billion bases of DNA in a text file are difficult to interpret, however, and specialized visualization ...

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  • May 02, 2016 · TNF-α modulates genome-wide redistribution of ΔNp63α/TAp73 and NF-κB cREL interactive binding on TP53 and AP-1 motifs to promote an oncogenic gene program in squamous cancer.

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    Mouse strain assembly hub - May 3, 2017. This assembly hub contains 16 different strains of mice as the primary sequence, along with strain-specific gene annotations. Viewing this assembly hub on mm10, there will be a multiple alignment between the reference and 16 different strains of mice plus rat.

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  • UCSC Genome Browser: Show variants in the UCSC Genome Browser (full view, compact view) Ensembl Genome Browser: Show variants in the Ensembl Genome Browser (full view, compact view) NCBI Sequence Viewer: Show distribution histogram of variants in the NCBI Sequence Viewer

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    UCSC Genome Browser on Human Feb. 2009 (GRCh37/hg19) Assembly move zoom in zoom out . chr17:7,571,720-7,590,868 19,149 bp. move start : Click on a feature for details ...

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  • UCSC Genome Browser on Human Dec. 2013 (GRCh38/hg38) Assembly move zoom in zoom out

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    Jan 04, 2017 · The UCSC Genome Browser database: 2017 update. ... University of California Santa Cruz, Santa Cruz, CA 95064, USA [email protected] (2)Genomics Institute, ... Mar 15, 2016 · UCSC genome browserは、米国カルフォルニア大学サンタクルズ校が提供するオンラインゲノムブラウザです。 ... TP53を入力し、GO ...

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  • May 02, 2016 · TNF-α modulates genome-wide redistribution of ΔNp63α/TAp73 and NF-κB cREL interactive binding on TP53 and AP-1 motifs to promote an oncogenic gene program in squamous cancer.

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    UCSC Genome Browser. Genome Browser Gateway Home; Genomes. Human GRCh38/hg38; Human GRCh37/hg19; Mouse GRCm38/mm10; Mouse NCBI37/mm9 ... Genome Browser Gateway GENOMAIZE.ORG was developed Daniel Vera, Katie Kyle, and Hank Bass using the UCSC browser and is hosted by FSU's Dept. of Biological Science. More information about the NUPRIME project is available at maizenucleosome.org. Maize DNS/Differential Nuclease Sensitivity References: 1st genome-wide DNS profiling in a multicellular organism:

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  • DISEASE: Note=TP53 is found in increased amounts in a wide variety of transformed cells. TP53 is frequently mutated or inactivated in about 60% of cancers. TP53 defects are found in Barrett metaplasia a condition in which the normally stratified squamous epithelium of the lower esophagus is replaced by a metaplastic columnar epithelium.

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    move start : Click on a feature for details. Click or drag in the base position track to zoom in. Click side bars for track options. Drag side bars or labels up or down to reorder tracks.

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  • The Ensembl Genome Browser: an overview What is a stable identifier in Ensembl? Stable identifiers are IDs for features (gene, transcript, protein, exon, etc.) that should not change even when underlying data and meta-data for those features change.

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    On June 22, 2000, UCSC and the other members of the International Human Genome Project consortium completed the first working draft of the human genome assembly, forever ensuring free public access to the genome and the information it contains. May 10, 2016 · Demonstration of species/genome assembly selection page (Gateway) on the UCSC Genome Browser. There is no audio on this video. Aug 18, 2012 · The UCSC Genome Browser () is a graphical viewer for genomic data now in its 13th year. Since the early days of the Human Genome Project, it has presented an integrated view of genomic data of many kinds. Now home to assemblies for 58 organisms, the Browser ...

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  • You might want to navigate to your nearest mirror - genome.ucsc.edu. User settings (sessions and custom tracks) will differ between sites. Read more. Take me to genome.ucsc.edu; Let me stay here genome-asia.ucsc.edu

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  • The UCSC Cancer Genomics Browser (https://genome-cancer.ucsc.edu) comprises a suite of web-based tools to integrate, visualize and analyze cancer genomics and clinical data. The browser displays whole-genome views of genome-wide experimental measurements for multiple samples alongside their associated clinical information.

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    The UCSC Genome Browser is developed and maintained by the Genome Bioinformatics Group, a cross-departmental team within the Center for Biomolecular Science and Engineering (CBSE) at the University of California Santa Cruz (UCSC). This team continues to implement new data and features every day.

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  • The UCSC Genome Browser is a visualization tool for the human genome providing a view of its genes and chromosomal features. Results from GWAS studies, conservation between other species, and results from many genomic and epigenomic studies are also provided. The Browser also has similar genomic information for a large number of animal species.

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    genome browsers for this exercise. Both allow you to export images of the browser window and offer links to download sequence data. Ensembl genome browser To access the Ensembl genome browser, click on the Location tab (which should have a title: Chromosome 17: 7,661,779-7,687,550. This indicates that the TP53 gene is located on

    Dove creek bean companyThe Genome Browser Gateway start page choices, April 2007 Make your Gateway choices: 1. Select Clade 2. Select genome = species: search 1 species at a time 3. Assembly: the official backbone DNA sequence 4. Position: location in the genome to examine 5. Image width: how many pixels in display window; 5000 max 6. Configure: make fonts bigger ...
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  • A comprehensive, integrated, non-redundant, well-annotated set of reference sequences including genomic, transcript, and protein.

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    617482 - TP53 TARGET GENE 3; TP53TG3 - TP53TG3 By differential display of an SW480 colon cancer line with an inducible TP53 expression system, followed by screening a testis cDNA library and RT-PCR, Ng et al. (1999) cloned 2 splice variants of TP53TG3. The Ensembl Genome Browser: an overview What is a stable identifier in Ensembl? Stable identifiers are IDs for features (gene, transcript, protein, exon, etc.) that should not change even when underlying data and meta-data for those features change. Sequence and Annotation Downloads. This page contains links to sequence and annotation data downloads for the genome assemblies featured in the UCSC Genome Browser. Table downloads are also available via the Genome Browser FTP server. For quick access to the most recent assembly of each genome, see the current genomes directory. This directory ...

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  • Aug 26, 2018 · About the GEP UCSC Genome Browser Mirror at WUSTL This site is a local mirror of the UCSC Genome Browser. It contains the reference sequence and working draft assemblies for many Drosophila genomes currently annotated by students participating in the GEP.

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    FUNCTION: E3 ubiquitin-protein ligase that mediates ubiquitination of p53/TP53, leading to its degradation by the proteasome. Inhibits p53/TP53- and p73/TP73-mediated cell cycle arrest and apoptosis by binding its transcriptional activation domain. Also acts as an ubiquitin ligase E3 toward itself and ARRB1. Permits the nuclear export of p53/TP53. The UCSC Genome Browser is a visualization tool for the human genome providing a view of its genes and chromosomal features. Results from GWAS studies, conservation between other species, and results from many genomic and epigenomic studies are also provided. The Browser also has similar genomic information for a large number of animal species.

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  • May 02, 2016 · TNF-α modulates genome-wide redistribution of ΔNp63α/TAp73 and NF-κB cREL interactive binding on TP53 and AP-1 motifs to promote an oncogenic gene program in squamous cancer.

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    This track shows various repeat regions that have been annotated along the genome. UCSC genome browser : Conservation: PhastCons conservation scores derived from multiple alignments of 45 vertebrate genomes to the human genome. UCSC genome browser Jan 04, 2017 · The UCSC Genome Browser database: 2017 update. ... University of California Santa Cruz, Santa Cruz, CA 95064, USA [email protected] (2)Genomics Institute, ...

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  • Mitochondrial genome - The mitochondrial reference sequence included in the GRCh38 assembly (termed "chrM" in the UCSC Genome Browser) is the Revised Cambridge Reference Sequence (rCRS) from MITOMAP with GenBank accession number J01415.2 and RefSeq accession number NC_012920.1. This differs from the chrM sequence (RefSeq accession number NC ...

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    How do I identify codon numbers with the UCSC Genome Browser? This tutorial will demonstrate how to locate amino acid numbers for coding genes using the UCSC Genome Browser . First we will navigate to genome.ucsc.edu and arrive on the main page at which place we can read information about the Browser and recent news.

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  • The focus of this unit is the University of California Santa Cruz (UCSC) Genome Browser’s organization and tools that provide support for molecular biomedical researchers worldwide (Meyer et al., 2013). Like reagents on a chemical shelf, sequences and associated data need to be obtained, extracted, manipulated, combined, analyzed, and used to ...

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    May 10, 2016 · Demonstration of species/genome assembly selection page (Gateway) on the UCSC Genome Browser. There is no audio on this video. Mouse strain assembly hub - May 3, 2017. This assembly hub contains 16 different strains of mice as the primary sequence, along with strain-specific gene annotations. Viewing this assembly hub on mm10, there will be a multiple alignment between the reference and 16 different strains of mice plus rat.

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  • To jump directly to a gene's position on the Genome Browser, set the position parameter in the URL to a gene symbol (e.g., TP53, MTOR, KRAS) and add the parameter singleSearch=knownCanonical. For example, the following link will open the Genome Browser for the hg19 human assembly at the position of TP53 on the knownCanonical dataset

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  • UCSC Genome Browser. Genome Browser Gateway Home; Genomes. Human GRCh38/hg38; Human GRCh37/hg19; Mouse GRCm38/mm10; Mouse NCBI37/mm9 ... Genome Browser Gateway

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  • The University of California Santa Cruz (UCSC) Genome Browser (genome.ucsc.edu) is a popular Web-based tool for quickly displaying a requested portion of a genome at any scale, accompanied by a series of aligned annotation “tracks”.

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    This track shows various repeat regions that have been annotated along the genome. UCSC genome browser : Conservation: PhastCons conservation scores derived from multiple alignments of 45 vertebrate genomes to the human genome. UCSC genome browser 617482 - TP53 TARGET GENE 3; TP53TG3 - TP53TG3 By differential display of an SW480 colon cancer line with an inducible TP53 expression system, followed by screening a testis cDNA library and RT-PCR, Ng et al. (1999) cloned 2 splice variants of TP53TG3.

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